BEAST is built on a large body of prior work and appropriate citations for individual modules, models and components will be listed when BEAST is run. BEAST-Users mailing list. Users are strongly advised to join the BEAST mailing-list. This will be used to announce new versions and advise users about bugs and problems.

Nov 14, 2018 · BEAST v1.10.4 fixes a bug when trying to specify a burnin on the command line version of LogCombiner. It also introduces two new command line options specific to BEAGLE v3.1 (-beagle_threading_off and -beagle_thread_count).

Installing BEAST BEAST has been developed in Java , which allows the same code to run on any platform that has the Java software installed. We have also created packages for each of the common operating systems to provide a user-interface that is ‘native’ and familiar.

FigTree is a program for viewing trees, including summary information produced by TreeAnnotator, and producing publication quality figures.

Jun 17, 2016 · Download BEAST v1.8.4 binaries for Mac, Windows and UNIX/Linux Version 1.8.4 released 17th June 2016 New Features: New structured list of citations printed to screen before running. Option ('-citation_file') to write citation list to file.

BEAST can be downloaded from the following link: BEAST X v10.5.0-beta5 - UNIX/Linux version 46.2MB; This will download a compressed tar archive (a ‘.tgz’ file).

Using BEAGLE with BEAST BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics package. It can make use of highly-parallel processors such as those in …

Installing BEAST. Unzip the downloaded compressed ZIP archive (currently BEAST.v10.5.0-beta5.zip). The unzipped files contain executable binaries for BEAST, BEAUti, LogCombiner, TreeAnnotator and TreeStat. Double-clicking on those files will automatically start the corresponding program. BEAGLE acceleration library

Here, we highlight some recent modifications we have made to make the analysis of tens of thousand of taxa in BEAST feasible on a time-scale that can help inform public health responses. Many of these improvements are based on re-implementations of approaches used in other phylogenetic software, and we are grateful to the entire phylogenetic ...

BEAUti is a graphical user-interface (GUI) application for generating BEAST XML files. It is distributed in the same package as BEAST. To download it, go to the BEAST download page .